Analysis and Reporting in Reproducible Research

Return to Reproducible Research Methodology

Document Processing Literate Programming

Approaches Aimed at Reproducible Reports

R-Based Methods

SAS-Based Methods

Software-independent Methods

Approaches Involving More Than Code and Background/Interpretation Text

Emacs org mode

Emacs org mode provides a way to build a self-contained workflow file with not only code and interpretations but also embedded work and planning items, according to Tony Rossini (Novartis Pharma AG, Basel)

Reproducible Interactive Approaches galaxy for genomic processing and basic analysis

Genomic data management and processing is done via a web graphical user interface, but the history of the steps selected is saved in a re-executable, modifiable fashion. This history can be shared with other galaxy users. galaxy is free.

Using R and REDCap's API for Reports